PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499496.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 291aa    MW: 33112.1 Da    PI: 5.7987
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499496.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.25.9e-1565104645
                     HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     +s+r  tf kR+ng++KK +E+S+LC++e++ ii+ ++++
  XP_004499496.2  65 HSKRRETFKKRKNGLIKKVSEISTLCGIEACAIIYDKNNT 104
                     688999*****************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.04952103IPR002100Transcription factor, MADS-box
SMARTSM004329.5E-1952111IPR002100Transcription factor, MADS-box
CDDcd002661.75E-2853136No hitNo description
PRINTSPR004041.3E-85474IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2354145IPR002100Transcription factor, MADS-box
PfamPF003191.5E-1462103IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-87489IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-889110IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVLMCLQQSG IVRLCGDDLA CRTKMLVCLQ QSGIVRFCGE DLADRVKINT NMARKKVKLA  60
YITCHSKRRE TFKKRKNGLI KKVSEISTLC GIEACAIIYD KNNTQVEVWP SESEIKSVLS  120
RFMSFPEMER SKKMLDQEGF LRQTIAKVYE QLKKQIEETR KKEMTNLIGQ YIHTGEFNGY  180
LMSKNDLNDF SSFIDESLKT IEQKMSQMAI IGEEDIGNGV QSMNAIEGQE NIGHALLRLV  240
SGGEDQQENM GHVAQGLETN ICEDLQINYG QWPMDFPMLP FSYDSVDPNG F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15375RKKVKLAYITCHSKRRETFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499496.20.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-38AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A072UY352e-75A0A072UY35_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.17e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-39AGAMOUS-like 80